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  5. Spa_g18276

Spa_g18276


Description : not classified & original description: none


Gene families : OG0001121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001121_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18276

Target Alias Description ECC score Gene Family Method Actions
AT5G37030 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 OrthoFinder output from all 47 species
AT5G37140 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 OrthoFinder output from all 47 species
AT5G37160 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 OrthoFinder output from all 47 species
AT5G37165 No alias No description available 0.01 OrthoFinder output from all 47 species
Ceric.02G080200.1 Ceric.02G080200 not classified & original description: pacid=50585102... 0.03 OrthoFinder output from all 47 species
Dac_g39815 No alias not classified & original description: none 0.27 OrthoFinder output from all 47 species
Dcu_g20539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49107 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010251001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01010254001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01028736001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028738001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028739001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01028740001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g49320.1 LOC_Os04g49320 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_245976g0010 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g25374 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g35531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 258 604
IPR041679 DNA2/NAM7-like_C 611 801
No external refs found!