Spa_g18275

Description : tRNA guanine-methyltransferase *(TRM3) & original description: none

Gene families : OG0004511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g18275

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Target	Alias	Description	ECC score	Gene Family Method
Als_g27820	No alias	tRNA guanine-methyltransferase *(TRM3) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene40599.t1	Aspi01Gene40599	tRNA guanine-methyltransferase *(TRM3) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene40600.t2	Aspi01Gene40600	tRNA guanine-methyltransferase *(TRM3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0276.g061443	No alias	tRNA guanine-methyltransferase *(TRM3) & original...	0.04	OrthoFinder output from all 47 species
Ceric.11G065800.1	Ceric.11G065800	tRNA guanine-methyltransferase *(TRM3) & original...	0.03	OrthoFinder output from all 47 species
Dde_g10990	No alias	tRNA guanine-methyltransferase *(TRM3) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01003688001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
Len_g24848	No alias	tRNA guanine-methyltransferase *(TRM3) & original...	0.07	OrthoFinder output from all 47 species
Pir_g15349	No alias	tRNA guanine-methyltransferase *(TRM3) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e000019_P001	Zm00001e000019	tRNA guanosine-methyltransferase (TRM3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030151	molybdenum ion binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	1680	1821

External Links

No external refs found!

Spa_g18275

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation