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  5. Spa_g17412

Spa_g17412


Description : regulatory protein *(RCF3) of HYL1-phosphorylation & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g17412

Target Alias Description ECC score Gene Family Method Actions
Adi_g011502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07063 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09611 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057204 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Cba_g05938 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Cba_g06665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.04 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12132 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g34355 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Pir_g38350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g13999 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Ppi_g12960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 588 652
IPR004088 KH_dom_type_1 336 384
IPR004088 KH_dom_type_1 177 243
IPR004088 KH_dom_type_1 61 110
IPR004088 KH_dom_type_1 420 483
No external refs found!