Spa_g16859

Description : component *(NOT2) of mRNA deadenylation CCR4-NOT complex & original description: none

Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g16859
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00180540	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.03	OrthoFinder output from all 47 species
Adi_g057086	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ala_g12726	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Als_g15009	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Aop_g13368	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.138	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g06443	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Lfl_g03249	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
MA_19243g0010	VIP2, AtVIP2	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species
Mp1g21150.1	No alias	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species
Msp_g05375	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Nbi_g08612	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	532	650

External Links

No external refs found!

Spa_g16859

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation