Aev_g20608 (AtLIG6, LIG6)

Aliases : AtLIG6, LIG6

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none

Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g20608

Target	Alias	Description	ECC score	Gene Family Method
Als_g01152	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Aob_g08435	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Ceric.28G053000.1	ATLIG1, LIG1,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01031470001	ATLIG1, LIG1	DNA damage response.DNA repair mechanisms.base excision...	0.03	OrthoFinder output from all 47 species
LOC_Os10g34750.1	ATLIG1, LIG1,...	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.02	OrthoFinder output from all 47 species
Nbi_g36106	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Solyc11g066370.2.1	ATLIG1, LIG1,...	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.02	OrthoFinder output from all 47 species
Tin_g13706	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012308	DNA_ligase_ATP-dep_N	1160	1336
IPR012310	DNA_ligase_ATP-dep_cent	1403	1623
IPR011084	DRMBL	440	544
IPR012309	DNA_ligase_ATP-dep_C	1649	1758

External Links

No external refs found!

Aev_g20608 (AtLIG6, LIG6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation