1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g16322

Spa_g16322


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g16322
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aob_g01462 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011912 No alias not classified & original description: CDS=1-1008 0.01 OrthoFinder output from all 47 species
Azfi_s0035.g025723 No alias not classified & original description: CDS=1-1119 0.03 OrthoFinder output from all 47 species
Dac_g05036 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Dde_g03302 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Lfl_g05220 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_9777560g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Ore_g26043 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 16 137
IPR006941 RNase_CAF1 157 207
No external refs found!