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  5. Spa_g16297

Spa_g16297 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g16297

Target Alias Description ECC score Gene Family Method Actions
Aop_g16231 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19828.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48040.t1 HTA7, Aspi01Gene48040 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g26182 HTA13 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031123001 HTA7 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Len_g03984 HTA7 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10426943g0010 HTA7 histone (H2A) 0.04 OrthoFinder output from all 47 species
Ore_g05288 HTA10 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 92
IPR032454 Histone_H2A_C 95 127
No external refs found!