Spa_g16229 (RABF2B, ATRAB-F2B,...)

Aliases : RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B

Description : vesicle tethering small GTPase *(RAB5) & original description: none

Gene families : OG0001928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g16229

Target	Alias	Description	ECC score	Gene Family Method
AT5G45130	RAB5A, RHA1,...	RAB homolog 1	0.04	OrthoFinder output from all 47 species
Aop_g06832	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G125600.1	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.04	OrthoFinder output from all 47 species
Ceric.39G001100.1	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g14986	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.04	OrthoFinder output from all 47 species
LOC_Os12g43550.1	RABF2B,...	F-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Msp_g03095	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g04008	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.04	OrthoFinder output from all 47 species
Pir_g02423	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.02	OrthoFinder output from all 47 species
Tin_g01601	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	12	171

External Links

No external refs found!