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  5. Spa_g15754

Spa_g15754


Description : not classified & original description: none


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g15754

Target Alias Description ECC score Gene Family Method Actions
Adi_g105487 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g03588 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05627 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11313 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g13790 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0001.g000993 No alias not classified & original description: CDS=119-3475 0.05 OrthoFinder output from all 47 species
Azfi_s0032.g024762 OTP84 not classified & original description: CDS=238-3549 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g043991 OTP84 not classified & original description: CDS=230-3472 0.04 OrthoFinder output from all 47 species
Cba_g13501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G004500.1 Ceric.02G004500 not classified & original description: pacid=50584632... 0.04 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.07 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.07 OrthoFinder output from all 47 species
Dac_g10625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14757 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g22749 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13553 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g13051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009384 No alias not classified & original description: CDS=123-3881 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0234.g026528 No alias not classified & original description: CDS=213-3461 0.03 OrthoFinder output from all 47 species
Sam_g08396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 754 797
IPR002885 Pentatricopeptide_repeat 348 394
IPR002885 Pentatricopeptide_repeat 555 597
IPR002885 Pentatricopeptide_repeat 249 275
IPR002885 Pentatricopeptide_repeat 888 913
IPR002885 Pentatricopeptide_repeat 451 475
IPR002885 Pentatricopeptide_repeat 656 682
IPR002885 Pentatricopeptide_repeat 726 746
IPR032867 DYW_dom 1053 1136
No external refs found!