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  5. Spa_g15402

Spa_g15402 (PUB38, ATPUB38)


Aliases : PUB38, ATPUB38

Description : U-Box-group-II E3 ubiquitin ligase & original description: none


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g15402
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT5G65200 PUB38, ATPUB38 plant U-box 38 0.02 OrthoFinder output from all 47 species
Ala_g10271 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04662 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g57958 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g08018 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09043 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_16859 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
MA_252170g0010 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Msp_g15300 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo90666 PUB39 U-box domain-containing protein 38 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Tin_g14561 No alias U-Box-group-II E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 9 77
IPR000225 Armadillo 498 535
No external refs found!