Spa_g15086


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g15086

Target Alias Description ECC score Gene Family Method Actions
Adi_g017907 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g114117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0336.g065546 No alias not classified & original description: CDS=1-2493 0.03 OrthoFinder output from all 47 species
Cba_g25946 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g57127 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.05 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.05 OrthoFinder output from all 47 species
Dac_g16660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp8g03500.1 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.02 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08780 CRM3, HCF152 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01185 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 308 363
IPR002885 Pentatricopeptide_repeat 141 182
IPR002885 Pentatricopeptide_repeat 232 280
IPR002885 Pentatricopeptide_repeat 385 430
No external refs found!