Spa_g14889

Description : component *(SYF1/MAC9) of MAC spliceosome-associated complex & original description: none

Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g14889

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00060p00216060	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
AT5G28740	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g108555	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Cba_g09535	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Ceric.09G080100.1	Ceric.09G080100	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.15	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Cre12.g513500	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Dcu_g04960	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
LOC_Os07g44970.1	LOC_Os07g44970	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species
Len_g30937	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Mp4g15330.1	No alias	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Solyc01g086990.3.1	Solyc01g086990	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.02	OrthoFinder output from all 47 species
Zm00001e010869_P001	Zm00001e010869	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species
Zm00001e035711_P001	Zm00001e035711	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	539	669

External Links

No external refs found!

Spa_g14889

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation