Spa_g14459 (FHY2, HY8, PHYA, FRE1)

Aliases : FHY2, HY8, PHYA, FRE1

Description : phytochrome photoreceptor *(PHY) & original description: none

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g14459

Target	Alias	Description	ECC score	Gene Family Method
AT4G16250	PHYD	phytochrome D	0.01	OrthoFinder output from all 47 species
AT4G18130	PHYE	phytochrome E	0.03	OrthoFinder output from all 47 species
Adi_g013003	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g017406	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g02606	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06575	HY3, OOP1, PHYB	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g16495	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g23525	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g33149	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02397	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g16813	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g18615	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.09	OrthoFinder output from all 47 species
Aspi01Gene37198.t1	HY3, OOP1, PHYB,...	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene49590.t1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene59146.t1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene63549.t1	FHY2, HY8, PHYA,...	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0234.g059451	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0313.g064222	FHY2, HY8, PHYA, FRE1	temperature sensor protein *(PHY-B) & original...	0.04	OrthoFinder output from all 47 species
Cba_g12773	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g22401	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22887	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g36588	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.29G025400.1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original...	0.03	OrthoFinder output from all 47 species
Dac_g16927	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04116	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g08852	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g14275	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g20972	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07141	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g19590.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.06	OrthoFinder output from all 47 species
Len_g05468	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g12690	HY3, OOP1, PHYB	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g22734	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g32315	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05031	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
MA_6809g0010	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor (PHY)	0.02	OrthoFinder output from all 47 species
MA_6809g0020	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor (PHY)	0.02	OrthoFinder output from all 47 species
Mp2g16090.1	HY3, OOP1, PHYB	phytochrome photoreceptor (PHY). temperature sensor...	0.03	OrthoFinder output from all 47 species
Msp_g05652	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g14074	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14224	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14660	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.09	OrthoFinder output from all 47 species
Msp_g19479	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g26661	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g29042	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30879	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35990	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g10936	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g10642	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05337	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g07013	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09246	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012090	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016463	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021223	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g16277	No alias	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g19599	No alias	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g24706	No alias	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Smo161430	HY3, OOP1, PHYB	External stimuli response.temperature.temperature...	0.04	OrthoFinder output from all 47 species
Solyc01g059870.4.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.02	OrthoFinder output from all 47 species
Solyc07g045480.3.1	PHYC, Solyc07g045480	phytochrome photoreceptor (PHY)	0.04	OrthoFinder output from all 47 species
Tin_g20479	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e001462_P001	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013767	PAS_fold	73	145
IPR013515	Phytochrome_cen-reg	1	41

External Links

No external refs found!

Spa_g14459 (FHY2, HY8, PHYA, FRE1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation