Spa_g13091 (PBF1)

Aliases : PBF1

Description : beta-type-6 component *(PBF) of 26S proteasome & original description: none

Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g13091

Target	Alias	Description	ECC score	Gene Family Method
AT3G60820	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.09	OrthoFinder output from all 47 species
Aev_g01998	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Ala_g08818	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Aop_g00288	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Azfi_s0392.g067771	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.5	PBF1	Protein degradation.26S proteasome.20S core...	0.04	OrthoFinder output from all 47 species
Cre26.g756797	PBF1	Protein degradation.26S proteasome.20S core...	0.07	OrthoFinder output from all 47 species
Dac_g02574	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Dcu_g00884	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.07	OrthoFinder output from all 47 species
Ehy_g28912	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
GSVIVT01000943001	PBF1	Protein degradation.26S proteasome.20S core...	0.03	OrthoFinder output from all 47 species
GSVIVT01027613001	PBF1	Protein degradation.26S proteasome.20S core...	0.03	OrthoFinder output from all 47 species
LOC_Os09g32800.1	PBF1, LOC_Os09g32800	component beta type-6 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Lfl_g00743	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
MA_207139g0010	PBF1	component beta type-6 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Mp1g12450.1	PBF1	component beta type-6 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Msp_g43692	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Pir_g12796	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Pp3c16_16960V3.1	PBF1, Pp3c16_16960	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.04	OrthoFinder output from all 47 species
Solyc02g084920.3.1	PBF1, Solyc02g084920	component beta type-6 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Zm00001e010121_P001	PBF1, Zm00001e010121	component beta type-6 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Zm00001e034624_P005	PBF1, Zm00001e034624	component beta type-6 of 26S proteasome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006553	lysine metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009085	lysine biosynthetic process	IEP	HCCA
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046451	diaminopimelate metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	9	204

External Links

No external refs found!

Spa_g13091 (PBF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation