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  5. Spa_g12989

Spa_g12989


Description : REM-type transcription factor & original description: none


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12989

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00151100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Ala_g04057 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22457 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01024536001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Pir_g17746 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Solyc06g007530.2.1 Solyc06g007530 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 163 253
No external refs found!