Spa_g12883 (EMB3010, RPS6B)

Aliases : EMB3010, RPS6B

Description : component *(eS6) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g12883
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00238890	RPS6A, RPS6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00048p00058600	RPS6A, RPS6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00077p00035710	RPS6A, RPS6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
AT4G31700	RPS6A, RPS6	ribosomal protein S6	0.18	OrthoFinder output from all 47 species
AT5G10360	EMB3010, RPS6B	Ribosomal protein S6e	0.23	OrthoFinder output from all 47 species
Adi_g043403	RPS6A, RPS6	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g113028	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g123459	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aev_g13323	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g27846	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ala_g39017	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Als_g11616	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Als_g30555	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g37443	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aob_g03931	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g06817	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Aop_g54144	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene03442.t1	EMB3010, RPS6B,...	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0114.g046096	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0350.g066542	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Ceric.16G007200.1	EMB3010, RPS6B,...	component *(eS6) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Ceric.32G000200.1	EMB3010, RPS6B,...	component *(eS6) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000704.73	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
Cre09.g400650	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Dac_g12343	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Dac_g32094	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Dcu_g12801	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g34811	RPS6A, RPS6	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dde_g04680	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dde_g07539	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dde_g25782	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01009072001	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
GSVIVT01015776001	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Gb_13281	EMB3010, RPS6B	component RPS6 of SSU proteome	0.12	OrthoFinder output from all 47 species
Gb_36985	EMB3010, RPS6B	component RPS6 of SSU proteome	0.13	OrthoFinder output from all 47 species
LOC_Os03g27260.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.24	OrthoFinder output from all 47 species
LOC_Os07g42950.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.26	OrthoFinder output from all 47 species
Len_g12022	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Len_g41611	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g04515	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g25069	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_10426804g0010	RPS6A, RPS6	component RPS6 of SSU proteome	0.11	OrthoFinder output from all 47 species
MA_72828g0010	EMB3010, RPS6B	component RPS6 of SSU proteome	0.14	OrthoFinder output from all 47 species
Mp4g01750.1	EMB3010, RPS6B	component RPS6 of SSU proteome	0.25	OrthoFinder output from all 47 species
Msp_g07467	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Msp_g39312	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Nbi_g02736	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Nbi_g19907	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g26609	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g17094	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_25430V3.1	EMB3010, RPS6B,...	Ribosomal protein S6e	0.05	OrthoFinder output from all 47 species
Pp3c15_25780V3.1	EMB3010, RPS6B,...	Ribosomal protein S6e	0.15	OrthoFinder output from all 47 species
Ppi_g09534	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g19004	No alias	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g19005	No alias	component *(eS6) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g25389	No alias	component *(eS6) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Smo172795	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Solyc08g006040.3.1	RPS6A, RPS6,...	component RPS6 of SSU proteome	0.11	OrthoFinder output from all 47 species
Solyc08g074240.3.1	RPS6A, RPS6,...	component RPS6 of SSU proteome	0.22	OrthoFinder output from all 47 species
Solyc12g096300.2.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.19	OrthoFinder output from all 47 species
Spa_g10201	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Tin_g00509	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e010802_P001	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.19	OrthoFinder output from all 47 species
Zm00001e035580_P002	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.23	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	128

External Links

No external refs found!

Spa_g12883 (EMB3010, RPS6B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation