Spa_g12536


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12536

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00130470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24733 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00769 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59816.t1 EMB2261, Aspi01Gene59816 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36532 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.04 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.04 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.05 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.04 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.04 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
Len_g14239 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18059 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g097730.4.1 Solyc01g097730 Pentatricopeptide repeat-containing protein At3g60050... 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
Solyc04g071280.3.1 Solyc04g071280 Pentatricopeptide repeat-containing protein At3g61360... 0.04 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.04 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Zm00001e031478_P001 Zm00001e031478 Pentatricopeptide repeat-containing protein At3g62470,... 0.04 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 268 323
IPR002885 Pentatricopeptide_repeat 525 573
IPR002885 Pentatricopeptide_repeat 349 398
IPR002885 Pentatricopeptide_repeat 594 642
IPR002885 Pentatricopeptide_repeat 664 711
IPR002885 Pentatricopeptide_repeat 420 468
IPR002885 Pentatricopeptide_repeat 495 522
IPR002885 Pentatricopeptide_repeat 142 172
IPR002885 Pentatricopeptide_repeat 179 207
IPR002885 Pentatricopeptide_repeat 730 761
No external refs found!