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  5. Spa_g12418

Spa_g12418 (EMB2453, ATPPR5)


Aliases : EMB2453, ATPPR5

Description : not classified & original description: none


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12418

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Ceric.1Z174800.1 Ceric.1Z174800 not classified & original description: pacid=50628243... 0.05 OrthoFinder output from all 47 species
Ehy_g05904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species
MA_12518g0010 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species
Ore_g30371 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g51172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g057200.4.1 EMB2750, Solyc01g057200 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.03 OrthoFinder output from all 47 species
Zm00001e000106_P001 Zm00001e000106 Pentatricopeptide repeat-containing protein At3g53170... 0.03 OrthoFinder output from all 47 species
Zm00001e032726_P001 EMB2750, Zm00001e032726 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 239 299
IPR002885 Pentatricopeptide_repeat 311 369
IPR002885 Pentatricopeptide_repeat 174 228
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 394 417
IPR002885 Pentatricopeptide_repeat 429 458
No external refs found!