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  5. Spa_g12187

Spa_g12187


Description : mTERF-type transcription factor & original description: none


Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00036560 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 OrthoFinder output from all 47 species
Als_g60921 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36244.t1 Aspi01Gene36244 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.50 No alias RNA biosynthesis.organelle... 0.01 OrthoFinder output from all 47 species
GSVIVT01028383001 No alias RNA biosynthesis.organelle... 0.02 OrthoFinder output from all 47 species
LOC_Os06g12070.1 LOC_Os06g12070 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Len_g24851 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_192398g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_57842g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_6307g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_81581g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Mp3g14990.1 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Ppi_g03790 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30682 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24968 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
CC GO:0070176 DRM complex IEP HCCA
CC GO:0090571 RNA polymerase II transcription repressor complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 179 341
IPR003690 MTERF 338 486
No external refs found!