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  5. Spa_g12107

Spa_g12107 (ELF8, VIP6)


Aliases : ELF8, VIP6

Description : component *(VIP6/CTR9) of PAF1C transcription initiation and elongation complex & original description: none


Gene families : OG0004869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004869_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12107

Target Alias Description ECC score Gene Family Method Actions
Als_g28871 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Ceric.21G032900.1 Ceric.21G032900 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Cre03.g189605 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dac_g14157 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Gb_17412 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
LOC_Os07g29360.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
MA_202g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g24200.1 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Pnu_g19387 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Ppi_g48264 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Smo149863 ELF8, VIP6 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc07g041510.3.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 306 333
IPR019734 TPR_repeat 716 742
IPR019734 TPR_repeat 346 375
IPR019734 TPR_repeat 681 706
No external refs found!