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  5. Spa_g10405

Spa_g10405 (AGL2, SEP1)


Aliases : AGL2, SEP1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10405

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00208680 AGL16,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00047p00190220 AGL4, SEP2,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
Aspi01Gene68989.t2 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007732 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.05 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.05 OrthoFinder output from all 47 species
Ceric.12G052800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.23G035100.1 AGL18, Ceric.23G035100 MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.30G027800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.38G021500.1 AGL2, SEP1,... MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01003864001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.09 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01012249001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
Gb_19178 AGL6 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Gb_39109 AGL6 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08754.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_458668g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.05 OrthoFinder output from all 47 species
Msp_g31707 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c16_19170V3.1 AGL61, DIA, Pp3c16_19170 AGAMOUS-like 61 0.01 OrthoFinder output from all 47 species
Spa_g27559 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003670_P002 AGL79, Zm00001e003670 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e015728_P001 AGL16, Zm00001e015728 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002487 TF_Kbox 94 159
IPR002100 TF_MADSbox 10 57
No external refs found!