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  5. Spa_g10359

Spa_g10359


Description : component *(MPE1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219730 evm_27.TU.AmTr_v1... E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G47430 No alias DWNN domain, a CCHC-type zinc finger 0.06 OrthoFinder output from all 47 species
Adi_g013405 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Adi_g060171 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aev_g21685 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Als_g14873 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Als_g20650 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Cre12.g543303 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g06496 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Dcu_g12334 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g13745 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Gb_27645 No alias component MPE1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os10g29560.1 LOC_Os10g29560 component MPE1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Lfl_g38659 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp2g17650.1 No alias component MPE1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Msp_g01132 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g26290 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ppi_g05925 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g17748 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 439 453
IPR025829 Zn_knuckle_CX2CX3GHX4C 194 213
IPR014891 DWNN_domain 3 76
No external refs found!