Zm00001d041791 (GRMZM2G139700)


Aliases : GRMZM2G139700

Description : 33.99 development.unspecified Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. CUP-SHAPED COTYLEDON 2 (CUC2)


Gene families : OG_01_0000027 (Gene family) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d041791
Cluster HCCA cluster: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT1G12260 EMB2749,... NAC 007 0.04 Gene family
AT1G54330 ANAC020, NAC020 NAC domain containing protein 20 0.03 Gene family
AT1G62700 VND5, ANAC026 Arabidopsis NAC domain containing protein 26 0.04 Gene family
AT1G65910 anac028, NAC028 NAC domain containing protein 28 0.02 Gene family
AT1G71930 ANAC030, VND7 vascular related NAC-domain protein 7 0.04 Gene family
AT1G76420 ANAC031, NAC368, CUC3 NAC (No Apical Meristem) domain transcriptional... 0.07 Gene family
AT1G79580 SMB, ANAC033 NAC (No Apical Meristem) domain transcriptional... 0.03 Gene family
AT2G18060 VND1, ANAC037 vascular related NAC-domain protein 1 0.04 Gene family
AT2G27300 ANAC040, NTL8 NTM1-like 8 0.02 Gene family
AT3G15170 ANAC054, ATNAC1, CUC1 NAC (No Apical Meristem) domain transcriptional... 0.05 Gene family
AT3G17730 anac057, NAC057 NAC domain containing protein 57 0.03 Gene family
AT4G10350 ANAC070, BRN2, NAC070 NAC domain containing protein 70 0.03 Gene family
AT4G17980 anac071, NAC071 NAC domain containing protein 71 0.05 Gene family
AT4G36160 VND2, NAC076, ANAC076 NAC domain containing protein 76 0.04 Gene family
AT5G07680 ANAC080,... NAC domain containing protein 80 0.03 Gene family
AT5G46590 anac096, NAC096 NAC domain containing protein 96 0.06 Gene family
AT5G53950 ATCUC2, ANAC098, CUC2 NAC (No Apical Meristem) domain transcriptional... 0.08 Gene family
AT5G66300 NAC105, VND3, ANAC105 NAC domain containing protein 105 0.02 Gene family
GSVIVT01001264001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.05 Gene family
GSVIVT01007982001 No alias 33.99 development.unspecified NAC domain containing... 0.02 Gene family
GSVIVT01008291001 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
GSVIVT01013419001 No alias 33.99 development.unspecified Identified in an enhancer... 0.07 Gene family
GSVIVT01016176001 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
GSVIVT01018623001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.04 Gene family
GSVIVT01019670001 No alias 33.99 development.unspecified NAC transcription factor... 0.04 Gene family
GSVIVT01027431001 No alias 33.99 development.unspecified NAC transcription factor... 0.04 Gene family
GSVIVT01033374001 No alias 33.99 development.unspecified Arabidopsis NAC domain... 0.03 Gene family
LOC_Os02g15340 Os02g0252200 33.99 development.unspecified NAC-domain protein.... 0.03 Gene family
LOC_Os03g42630 Os03g0624600 33.99 development.unspecified NAC domain containing... 0.03 Gene family
LOC_Os06g23650 Os06g0344900 33.99 development.unspecified Transcriptional activator... 0.08 Gene family
LOC_Os06g33940 Os06g0530400 33.99 development.unspecified NAC-domain protein.... 0.03 Gene family
LOC_Os08g02300 Os08g0115800 33.99 development.unspecified NAC transcription factor... 0.02 Gene family
LOC_Os08g40030 Os08g0511200 33.99 development.unspecified Identified in an enhancer... 0.1 Gene family
LOC_Os09g32260 Os09g0497900 33.99 development.unspecified Arabidopsis NAC domain... 0.02 Gene family
LOC_Os12g03050 Os12g0123800 33.99 development.unspecified Arabidopsis NAC domain... 0.03 Gene family
MA_10430397g0010 No alias 27.3.27 RNA.regulation of transcription.NAC domain... 0.02 Gene family
MA_109677g0010 No alias 33.99 development.unspecified NAC domain containing... 0.02 Gene family
MA_16595g0010 No alias 33.99 development.unspecified Transcriptional activator... 0.02 Gene family
Smo71404 PACid_15423223 33.99 development.unspecified Encodes a NAC-domain... 0.01 Gene family
Smo77371 PACid_15417917 33.99 development.unspecified Transcriptional activator... 0.02 Gene family
Solyc02g036430.2.1 Solyc02g036430.2 27.3.27 RNA.regulation of transcription.NAC domain... 0.02 Gene family
Solyc02g084345.1.1 Solyc02g084345.1 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
Solyc03g083880.3.1 Solyc03g083880.3 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
Solyc06g034340.2.1 Solyc06g034340.2 33.99 development.unspecified Encodes a NAC-domain... 0.02 Gene family
Solyc06g061080.3.1 Solyc06g061080.3 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Solyc06g063430.2.1 Solyc06g063430.2 33.99 development.unspecified NAC domain protein. SMB,... 0.05 Gene family
Solyc06g065410.3.1 Solyc06g065410.3 33.99 development.unspecified Encodes a NAC-domain... 0.06 Gene family
Solyc06g069100.2.1 Solyc06g069100.2 33.99 development.unspecified NAC domain containing... 0.02 Gene family
Solyc07g062840.3.1 Solyc07g062840.3 33.99 development.unspecified Transcriptional activator... 0.08 Gene family
Solyc11g018660.2.1 Solyc11g018660.2 33.99 development.unspecified Encodes a NAC-domain... 0.07 Gene family
Solyc12g017400.2.1 Solyc12g017400.2 33.99 development.unspecified NAC-domain protein.... 0.05 Gene family
Solyc12g036480.2.1 Solyc12g036480.2 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d003583 GRMZM2G099144 33.99 development.unspecified NAC domain protein. SMB,... 0.04 Gene family
Zm00001d013717 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d016119 GRMZM2G155816 33.99 development.unspecified NAC-domain protein.... 0.03 Gene family
Zm00001d017396 GRMZM2G315140 33.99 development.unspecified Encodes a NAC-domain... 0.02 Gene family
Zm00001d021424 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d022517 GRMZM2G181605 33.99 development.unspecified NAC domain containing... 0.02 Gene family
Zm00001d025483 GRMZM2G435824 33.99 development.unspecified NAC domain protein. SMB,... 0.03 Gene family
Zm00001d027459 GRMZM2G025642 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
Zm00001d030023 GRMZM2G082709 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d037029 GRMZM2G041746 33.99 development.unspecified NAC-domain protein.... 0.04 Gene family
Zm00001d046126 GRMZM2G104074 33.99 development.unspecified NAC-domain protein.... 0.03 Gene family
Zm00001d048456 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
Zm00001d051294 GRMZM2G354151 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003441 NAC-dom 14 141
No external refs found!