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  5. Spa_g10149

Spa_g10149


Description : not classified & original description: none


Gene families : OG0011508 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011508_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10149
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
Adi_g103454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G066200.1 Ceric.30G066200 not classified & original description: pacid=50608134... 0.03 OrthoFinder output from all 47 species
Dde_g26322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11885 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 226 273
IPR002885 Pentatricopeptide_repeat 326 374
IPR002885 Pentatricopeptide_repeat 425 471
IPR002885 Pentatricopeptide_repeat 619 666
IPR002885 Pentatricopeptide_repeat 822 869
IPR002885 Pentatricopeptide_repeat 720 767
IPR002885 Pentatricopeptide_repeat 523 570
IPR002885 Pentatricopeptide_repeat 126 172
IPR002885 Pentatricopeptide_repeat 794 817
IPR002885 Pentatricopeptide_repeat 200 225
IPR002885 Pentatricopeptide_repeat 101 124
No external refs found!