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  4. Sequence
  5. Spa_g09824

Spa_g09824


Description : not classified & original description: none


Gene families : OG0001011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001011_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09824

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00200600 evm_27.TU.AmTr_v1... Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00178p00038720 evm_27.TU.AmTr_v1... Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G46110 No alias Domain of unknown function (DUF966) 0.03 OrthoFinder output from all 47 species
Adi_g060813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25219 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g15972 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g12604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18845.t1 Aspi01Gene18845 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene21078.t1 Aspi01Gene21078 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene53127.t1 Aspi01Gene53127 A1-class (Pepsin) protease & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53794.t2 Aspi01Gene53794 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene58852.t1 Aspi01Gene58852 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene58853.t1 Aspi01Gene58853 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0116.g046319 No alias not classified & original description: CDS=53-2212 0.02 OrthoFinder output from all 47 species
Azfi_s0233.g059400 No alias not classified & original description: CDS=20-2416 0.02 OrthoFinder output from all 47 species
Ceric.13G026100.1 Ceric.13G026100 not classified & original description: pacid=50635606... 0.04 OrthoFinder output from all 47 species
Dac_g16699 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g37001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g62200.1 LOC_Os01g62200 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
LOC_Os08g44760.1 LOC_Os08g44760 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_3651g0010 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp5g13130.1 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g04028 No alias not classified & original description: none 0.4 OrthoFinder output from all 47 species
Pir_g25861 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000749 No alias not classified & original description: CDS=1079-3364 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010278 No alias not classified & original description: CDS=116-3175 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0192.g025363 No alias not classified & original description: CDS=123-2075 0.01 OrthoFinder output from all 47 species
Smo412562 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g49772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11225 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000820_P002 Zm00001e000820 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e027133_P001 Zm00001e027133 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR010369 SOK 7 199
No external refs found!