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  5. Spa_g09433

Spa_g09433 (ATCFM2, CFM2)


Aliases : ATCFM2, CFM2

Description : not classified & original description: none


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09433
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 OrthoFinder output from all 47 species
Adi_g022878 ATCFM3A, CFM3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06265 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_39217 EMB1865 CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g28510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Zm00001e041033_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e041034_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 611 681
IPR001890 RNA-binding_CRM 548 611
IPR001890 RNA-binding_CRM 836 915
IPR001890 RNA-binding_CRM 1032 1118
IPR001890 RNA-binding_CRM 1269 1355
No external refs found!