Description : cohesin cofactor *(PDS5) & original description: none
Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | OrthoFinder output from all 47 species | |
AT1G15940 | No alias | Tudor/PWWP/MBT superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.03 | OrthoFinder output from all 47 species | |
AT5G47690 | No alias | binding | 0.03 | OrthoFinder output from all 47 species | |
Adi_g019469 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g117140 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g18795 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g32765 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g11522 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Ala_g20243 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g03900 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Als_g62298 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aob_g07435 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aop_g08128 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0005.g009277 | No alias | cohesin cofactor *(PDS5) & original description: CDS=453-4370 | 0.05 | OrthoFinder output from all 47 species | |
Ceric.11G037000.1 | Ceric.11G037000 | cohesin cofactor *(PDS5) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.34G009800.1 | Ceric.34G009800 | cohesin cofactor *(PDS5) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.37G021700.1 | Ceric.37G021700 | cohesin cofactor *(PDS5) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g14818 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g14145 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01002731001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01002824001 | No alias | No description available | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01023587001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | OrthoFinder output from all 47 species | |
Gb_23673 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g64900.1 | LOC_Os01g64900 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g17840.1 | LOC_Os06g17840 | cohesin cofactor (PDS5) | 0.06 | OrthoFinder output from all 47 species | |
Len_g21353 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Len_g21968 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g46602 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Lfl_g09667 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
MA_10426926g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
MA_10433886g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
MA_10434588g0020 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
MA_286689g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
Mp3g13850.1 | No alias | cohesin cofactor (PDS5) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g25546 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g25803 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g28747 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g04827 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g18717 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g22700 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g57308 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g59813 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0105.g020186 | No alias | exoribonuclease *(SOV) & original description: CDS=109-2307 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g18018 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g18046 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g35729 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Solyc06g065710.3.1 | Solyc06g065710 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
Solyc11g012770.2.1 | Solyc11g012770 | cohesin cofactor (PDS5) | 0.06 | OrthoFinder output from all 47 species | |
Tin_g20983 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e007658_P001 | Zm00001e007658 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e015094_P002 | Zm00001e015094 | cohesin cofactor (PDS5) | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e019139_P001 | Zm00001e019139 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e022962_P003 | Zm00001e022962 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e030989_P001 | Zm00001e030989 | cohesin cofactor (PDS5) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e036853_P003 | Zm00001e036853 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0010181 | FMN binding | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |