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  5. Spa_g09097

Spa_g09097 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09097

Target Alias Description ECC score Gene Family Method Actions
Ala_g21964 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G005300.1 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 1157 1288
IPR001650 Helicase_C 598 715
IPR000999 RNase_III_dom 1325 1480
IPR000999 RNase_III_dom 1556 1669
IPR006935 Helicase/UvrB_N 191 361
No external refs found!