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  5. Spa_g08548

Spa_g08548


Description : nucleocytoplasmic transport karyopherin *(XPO4) & original description: none


Gene families : OG0004951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004951_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08548

Target Alias Description ECC score Gene Family Method Actions
Aev_g07994 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.05 OrthoFinder output from all 47 species
Ala_g08098 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.04 OrthoFinder output from all 47 species
Als_g12362 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.05 OrthoFinder output from all 47 species
Aob_g05346 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.03 OrthoFinder output from all 47 species
Ceric.34G048300.1 Ceric.34G048300 nucleocytoplasmic transport karyopherin *(XPO4) &... 0.04 OrthoFinder output from all 47 species
Dcu_g51248 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.05 OrthoFinder output from all 47 species
Dde_g22178 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.07 OrthoFinder output from all 47 species
Gb_04408 No alias XPO4 nucleocytoplasmic transport karyopherin 0.04 OrthoFinder output from all 47 species
Len_g12155 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.05 OrthoFinder output from all 47 species
Lfl_g36174 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.03 OrthoFinder output from all 47 species
Mp6g21410.1 No alias XPO4 nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species
Sam_g16315 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.03 OrthoFinder output from all 47 species
Zm00001e004578_P001 Zm00001e004578 XPO4 nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014877 XPO1_C_dom 950 1035
No external refs found!