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  5. Spa_g08409

Spa_g08409


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08409

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00018p00191870 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G60966 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G57750 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g088636 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ala_g01922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05022 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g14595 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g24368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27966.t1 Aspi01Gene27966 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene42978.t2 Aspi01Gene42978 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene46290.t1 Aspi01Gene46290 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene63855.t1 Aspi01Gene63855 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Cba_g37234 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g49099 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G098400.1 Ceric.01G098400 not classified & original description: pacid=50591772... 0.01 OrthoFinder output from all 47 species
Ceric.02G105300.1 ATL8, Ceric.02G105300 not classified & original description: pacid=50585310... 0.01 OrthoFinder output from all 47 species
Ceric.05G094800.1 ATL4H, Ceric.05G094800 not classified & original description: pacid=50578003... 0.02 OrthoFinder output from all 47 species
Ceric.10G008300.1 Ceric.10G008300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ceric.10G020700.1 RHA2A, Ceric.10G020700 not classified & original description: pacid=50612578... 0.02 OrthoFinder output from all 47 species
Ceric.18G057400.1 RHA3A, Ceric.18G057400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ceric.34G017800.1 Ceric.34G017800 not classified & original description: pacid=50623173... 0.01 OrthoFinder output from all 47 species
Ceric.35G023100.1 Ceric.35G023100 not classified & original description: pacid=50581868... 0.03 OrthoFinder output from all 47 species
Ceric.36G050500.1 BRH1, Ceric.36G050500 not classified & original description: pacid=50569096... 0.03 OrthoFinder output from all 47 species
Dac_g03534 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g15343 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dde_g22839 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g35132 ATL3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g38231 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g29562 ATL2, TL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g34550.1 LOC_Os08g34550 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Len_g12736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18467 ATL2, TL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59507 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Lfl_g18046 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
MA_26001g0020 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Nbi_g17930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43979 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g18035 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Pir_g23098 RHA2B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g23741 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g10839 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g14625 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g52177 RHA3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005972 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017298 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Solyc05g018760.3.1 XERICO, Solyc05g018760 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species
Solyc11g010330.3.1 Solyc11g010330 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Spa_g10665 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g22755 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g31385 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g39129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54510 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Tin_g28275 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e009142_P001 Zm00001e009142 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 204 247
No external refs found!