Spa_g08087

Description : pre-60S ribosomal subunit assembly factor *(NOP15) & original description: none

Gene families : OG0005172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005172_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g08087

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00119p00096560	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AT5G04600	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	OrthoFinder output from all 47 species
Aev_g04449	No alias	pre-60S ribosomal subunit assembly factor *(NOP15) &...	0.02	OrthoFinder output from all 47 species
Azfi_s0078.g038170	No alias	pre-60S ribosomal subunit assembly factor *(NOP15) &...	0.03	OrthoFinder output from all 47 species
Dac_g13309	No alias	pre-60S ribosomal subunit assembly factor *(NOP15) &...	0.04	OrthoFinder output from all 47 species
LOC_Os08g31810.3	LOC_Os08g31810	pre-60S ribosomal subunit assembly factor (NOP15)	0.02	OrthoFinder output from all 47 species
Ore_g06706	No alias	pre-60S ribosomal subunit assembly factor *(NOP15) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	51	118

External Links

No external refs found!