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  5. Spa_g07865

Spa_g07865


Description : not classified & original description: none


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07865
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aspi01Gene22753.t1 Aspi01Gene22753 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053555 No alias not classified & original description: CDS=63-1850 0.04 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc12g088050.2.1 Solyc12g088050 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g04774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g05669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 442 630
IPR010325 Rhamnogal_lyase 14 202
IPR029413 RG-lyase_II 358 424
No external refs found!