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  5. Spa_g07392

Spa_g07392 (PUB15)


Aliases : PUB15

Description : not classified & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07392
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.03 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080188 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06664 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05074 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21703 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene01377.t1 PUB14, ATPUB14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.03 OrthoFinder output from all 47 species
Cba_g00725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31838 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.05 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G093000.1 ATPUB17, PUB17,... not classified & original description: pacid=50635700... 0.03 OrthoFinder output from all 47 species
Dac_g09044 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26575 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01430 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02331 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07191 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os08g04470.1 PUB8, B80, LOC_Os08g04470 U-box domain-containing protein 8 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g08149 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
MA_9917294g0010 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g01206 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06986 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19002 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38766 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06418 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382 No alias not classified & original description: CDS=1-1704 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017664 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=217-2226 0.03 OrthoFinder output from all 47 species
Smo420513 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo75609 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
Solyc01g096460.2.1 Solyc01g096460 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g094610.3.1 PUB15, Solyc12g094610 U-box domain-containing protein 15 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18762 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 208 243
IPR000225 Armadillo 38 76
No external refs found!