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  5. Spa_g06515

Spa_g06515 (emb1138)


Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06515

Target Alias Description ECC score Gene Family Method Actions
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056600 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086708 emb1138 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Ala_g14243 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23186 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Als_g14234 PRH75 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08480 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Aop_g10862 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Aop_g18513 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02044 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cba_g36237 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G054800.1 emb1138, Ceric.06G054800 not classified & original description: pacid=50619432... 0.07 OrthoFinder output from all 47 species
Ceric.17G055300.1 emb1138, Ceric.17G055300 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.21G051700.1 emb1138, Ceric.21G051700 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.25 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.02 OrthoFinder output from all 47 species
Dac_g01008 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.09 OrthoFinder output from all 47 species
Dac_g02286 PRH75 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g00876 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dde_g09784 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02845 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15362 emb1138 group-II intron splicing RNA helicase *(PMH) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g21458 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000821001 PMH2, ATRH53 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_10087 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41715.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Len_g55591 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38604 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.04 OrthoFinder output from all 47 species
MA_17924g0020 PRH75 DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.03 OrthoFinder output from all 47 species
Msp_g10755 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13082 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Ore_g38810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Pir_g16512 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30474 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c1_40060V3.1 emb1138, Pp3c1_40060 DEAD box RNA helicase (RH3) 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750 PRH75 not classified & original description: CDS=177-2189 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.04 OrthoFinder output from all 47 species
Solyc12g006320.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Tin_g08271 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Tin_g13858 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39635 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.04 OrthoFinder output from all 47 species
Zm00001e006243_P001 emb1138, Zm00001e006243 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e018107_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR012562 GUCT 582 677
IPR011545 DEAD/DEAH_box_helicase_dom 178 350
IPR001650 Helicase_C 387 495
No external refs found!