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  5. Spa_g06506

Spa_g06506


Description : not classified & original description: none


Gene families : OG0014412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0014412_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06506
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Aop_g03226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21813 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g28503 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g63211 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g03251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 644 669
IPR002885 Pentatricopeptide_repeat 142 163
IPR002885 Pentatricopeptide_repeat 414 437
IPR002885 Pentatricopeptide_repeat 446 474
IPR002885 Pentatricopeptide_repeat 515 538
IPR002885 Pentatricopeptide_repeat 214 236
IPR002885 Pentatricopeptide_repeat 340 388
IPR002885 Pentatricopeptide_repeat 541 588
IPR002885 Pentatricopeptide_repeat 240 286
IPR002885 Pentatricopeptide_repeat 744 791
No external refs found!