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  5. Spa_g06385

Spa_g06385 (VLN4, ATVLN4)


Aliases : VLN4, ATVLN4

Description : villin actin-crosslinking factor & original description: none


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06385

Target Alias Description ECC score Gene Family Method Actions
Ala_g02593 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12931 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29064 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g24220.2 ATVLN2, VLN2,... villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
MA_10430359g0030 ATVLN2, VLN2 Villin-2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Pnu_g22728 ATVLN3, VLN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30299 ATVLN3, VLN3 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
BP GO:0007010 cytoskeleton organization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003128 Villin_headpiece 934 969
IPR007123 Gelsolin-like_dom 31 111
IPR007123 Gelsolin-like_dom 259 332
IPR007123 Gelsolin-like_dom 143 211
IPR007123 Gelsolin-like_dom 509 576
IPR007123 Gelsolin-like_dom 401 475
No external refs found!