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  5. Spa_g06007

Spa_g06007 (CRF3)


Aliases : CRF3

Description : subgroup ERF-VI transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06007
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00095120 ERF110,... Ethylene-responsive transcription factor ERF110... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00250320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00051610 TINY2,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
AT1G28360 ATERF12, ERF12 ERF domain protein 12 0.05 OrthoFinder output from all 47 species
Adi_g060064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13616 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10901 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g08822 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01047.t1 Aspi01Gene01047 subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04124.t1 Aspi01Gene04124 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27644.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene28275.t1 Aspi01Gene28275 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene49723.t1 HRE2, Aspi01Gene49723 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63662.t1 HRE2, Aspi01Gene63662 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69728.t1 RAP2.2, Aspi01Gene69728 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Azfi_s0070.g036745 ATERF-9, ERF9, ATERF9 not classified & original description: CDS=1-3831 0.05 OrthoFinder output from all 47 species
Cba_g23893 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Cba_g26267 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G057600.1 RAP2.2, Ceric.04G057600 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Dcu_g08328 LEP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10280 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g16669 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g42203 No alias subgroup ERF-V transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45380 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Gb_08781 ABI4, SAN5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Gb_25978 ABI4, SAN5,... Ethylene-responsive transcription factor ABI4... 0.02 OrthoFinder output from all 47 species
Gb_41294 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Msp_g03932 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g04749 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Msp_g08809 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08810 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09157 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g10313 No alias subgroup ERF-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11296 CRF4 subgroup ERF-VI transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g28144 DDF1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g10528 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13205 No alias subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002116 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013375 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023700 AtERF48, DREB2C subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g18741 CRF3 subgroup ERF-VI transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g00486 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g13149 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29003 tny subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013927_P001 ATERF3, ERF3,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e015869_P001 RAP2.4, Zm00001e015869 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e025064_P001 ATERF3, ERF3,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e036260_P001 RAP2.12, Zm00001e036260 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!