Spa_g06006 (AtRH36, SWA3, RH36)

Aliases : AtRH36, SWA3, RH36

Description : SSU processome assembly factor *(SWA3) & original description: none

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g06006

Target	Alias	Description	ECC score	Gene Family Method
AT1G16280	AtRH36, SWA3, RH36	RNA helicase 36	0.03	OrthoFinder output from all 47 species
Aob_g01607	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g04191	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Dde_g05816	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01032335001	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Mp4g20180.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ppi_g04436	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013281_P004	Zm00001e013281	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Zm00001e035639_P002	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000387	spliceosomal snRNP assembly	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	292	394
IPR011545	DEAD/DEAH_box_helicase_dom	79	247

External Links

No external refs found!