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  5. Spa_g05534

Spa_g05534 (SKIP6)


Aliases : SKIP6

Description : substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase complex & original description: none


Gene families : OG0000469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05534

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00211260 evm_27.TU.AmTr_v1... F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ceric.22G041400.1 SKIP6, Ceric.22G041400 not classified & original description: pacid=50613861... 0.03 OrthoFinder output from all 47 species
Gb_01223 SKIP6 F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_06552 No alias F-box/kelch-repeat protein At1g55270 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ppi_g06916 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 19 56
IPR006652 Kelch_1 150 198
IPR006652 Kelch_1 105 146
No external refs found!