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  5. Spa_g05502

Spa_g05502


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05502
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00013790 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00096800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AMTR_s00119p00095480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AMTR_s00131p00063460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AT1G79430 APL, WDY Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G04030 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G17695 KAN3 Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g006433 PHL1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g023512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080178 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g088380 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g08018 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g38880 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g39180 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12016 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g14535 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g22715 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ala_g22830 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03610 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0124.g048483 No alias transcription factor *(CLAUSA) & original description: CDS=1-1350 0.03 OrthoFinder output from all 47 species
Ceric.10G090700.1 Ceric.10G090700 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G062400.1 Ceric.12G062400 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G027900.1 Ceric.21G027900 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G076700.1 Ceric.21G076700 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.22G040100.1 Ceric.22G040100 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G067100.1 Ceric.31G067100 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g08384 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g21452 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g04486 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g29468 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31338 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
LOC_Os02g04640.1 LOC_Os02g04640 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g20900.1 LOC_Os03g20900 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os06g35140.1 LOC_Os06g35140 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g01480.1 LOC_Os11g01480 Putative Myb family transcription factor At1g14600... 0.03 OrthoFinder output from all 47 species
LOC_Os12g01490.1 LOC_Os12g01490 Putative Myb family transcription factor At1g14600... 0.03 OrthoFinder output from all 47 species
Lfl_g01284 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g05890 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_8865g0010 KAN2 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Mp3g04970.1 KAN, KAN1 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Mp4g01560.1 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g25465 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g31008 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g37137 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g12418 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g12734 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g10194 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g19106 KAN, KAN1 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37615 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59890 No alias KANADI-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005961 KAN3 not classified & original description: CDS=52-843 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017585 No alias not classified & original description: CDS=1499-2212 0.02 OrthoFinder output from all 47 species
Sam_g15241 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g19047 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc07g045000.4.1 Solyc07g045000 Putative Myb family transcription factor At1g14600... 0.03 OrthoFinder output from all 47 species
Solyc12g017370.3.1 APL, WDY, Solyc12g017370 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g24824 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e001526_P001 Zm00001e001526 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e009653_P001 Zm00001e009653 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e013626_P001 Zm00001e013626 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e014339_P001 Zm00001e014339 Putative Myb family transcription factor At1g14600... 0.01 OrthoFinder output from all 47 species
Zm00001e018018_P002 KAN4, ATS, Zm00001e018018 G2-like GARP transcription factor 0.01 OrthoFinder output from all 47 species
Zm00001e030364_P002 Zm00001e030364 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e030689_P002 Zm00001e030689 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 16 66
IPR025756 Myb_CC_LHEQLE 100 145
No external refs found!