Zm00001d041056 (GRMZM2G352159)


Aliases : GRMZM2G352159

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. auxin response factor 2 (ARF2)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d041056
Cluster HCCA cluster: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
AT1G59750 ARF1 auxin response factor 1 0.02 Gene family
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.03 Gene family
GSVIVT01008639001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os01g70270 Os01g0927600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
LOC_Os06g48950 Os06g0702600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
LOC_Os08g40900 Os08g0520500,... 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc01g103050.3.1 Solyc01g103050.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc04g081235.1.1 Solyc04g081235.1 No description available 0.04 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.06 Gene family
Zm00001d036593 GRMZM2G089640 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 238
IPR010525 Auxin_resp 263 345
No external refs found!