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  5. Spa_g05113

Spa_g05113


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05113
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00133270 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Azfi_s0079.g038411 No alias not classified & original description: CDS=856-2112 0.03 OrthoFinder output from all 47 species
Ehy_g12443 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g19115 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01022110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Gb_30059 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
LOC_Os08g14320.1 LOC_Os08g14320 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10430240g0020 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Pir_g28545 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g24167 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc07g062720.3.1 Solyc07g062720 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e013125_P002 Zm00001e013125 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e032327_P003 Zm00001e032327 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 571 613
No external refs found!