Spa_g05089


Description : not classified & original description: none


Gene families : OG0012411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05089

Target Alias Description ECC score Gene Family Method Actions
Ala_g11362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25799 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 205
IPR002885 Pentatricopeptide_repeat 258 305
IPR002885 Pentatricopeptide_repeat 359 405
IPR002885 Pentatricopeptide_repeat 331 353
IPR002885 Pentatricopeptide_repeat 434 459
IPR002885 Pentatricopeptide_repeat 768 796
IPR002885 Pentatricopeptide_repeat 840 864
IPR002885 Pentatricopeptide_repeat 666 695
IPR002885 Pentatricopeptide_repeat 565 594
IPR002885 Pentatricopeptide_repeat 462 488
No external refs found!