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  5. Spa_g05057

Spa_g05057 (VIP5)


Aliases : VIP5

Description : component *(VIP5/RTF1) of PAF1C transcription initiation and elongation complex & original description: none


Gene families : OG0003007 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05057
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Adi_g076580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_11633 VIP5 component VIP5/RTF1 of PAF1C transcription initiation... 0.01 OrthoFinder output from all 47 species
MA_212222g0010 VIP5 component VIP5/RTF1 of PAF1C transcription initiation... 0.01 OrthoFinder output from all 47 species
MA_86558g0010 VIP5 component VIP5/RTF1 of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Pnu_g25992 VIP5 component *(VIP5/RTF1) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR004343 Plus-3_dom 74 177
No external refs found!