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  5. Spa_g04939

Spa_g04939


Description : not classified & original description: none


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04939
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.07 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.05 OrthoFinder output from all 47 species
Dcu_g17091 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g12728 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Gb_17291 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Len_g02383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.06 OrthoFinder output from all 47 species
Msp_g09352 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g35489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.04 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.04 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 407
IPR002885 Pentatricopeptide_repeat 450 476
IPR002885 Pentatricopeptide_repeat 415 443
IPR002885 Pentatricopeptide_repeat 238 265
IPR002885 Pentatricopeptide_repeat 305 353
IPR002885 Pentatricopeptide_repeat 166 210
No external refs found!