Spa_g04459

Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g04459
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
AT2G37190	No alias	Ribosomal protein L11 family protein	0.26	OrthoFinder output from all 47 species
AT3G53430	No alias	Ribosomal protein L11 family protein	0.07	OrthoFinder output from all 47 species
AT5G60670	No alias	Ribosomal protein L11 family protein	0.12	OrthoFinder output from all 47 species
Adi_g063886	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g116841	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g29977	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ala_g38012	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Als_g04839	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Als_g10325	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Als_g50372	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g62499	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g06826	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Aop_g52643	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g70967	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Azfi_s0004.g008501	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0279.g062260	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.15G067600.1	Ceric.15G067600	component *(uL11) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Ceric.23G070600.1	Ceric.23G070600	component *(uL11) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Dac_g01966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Dcu_g34940	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01025189001	No alias	No description available	0.18	OrthoFinder output from all 47 species
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
LOC_Os02g47140.1	LOC_Os02g47140	component RPL12 of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os04g50990.1	LOC_Os04g50990	component RPL12 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Len_g13594	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Len_g23627	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16793	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g22014	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Msp_g37966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Msp_g38598	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g45524	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Nbi_g12624	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g02380	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pir_g02937	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pir_g37022	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_14410V3.1	Pp3c15_14410	Ribosomal protein L11 family protein	0.09	OrthoFinder output from all 47 species
Pp3c6_19290V3.1	Pp3c6_19290	Ribosomal protein L11 family protein	0.04	OrthoFinder output from all 47 species
Ppi_g06745	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g23184	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g24794	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g39860	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05606	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g06788	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g40646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc06g075180.1.1	Solyc06g075180	component RPL12 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Solyc11g065670.1.1	Solyc11g065670	component RPL12 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Solyc11g069440.1.1	Solyc11g069440	component RPL12 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Tin_g23699	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e007067_P001	Zm00001e007067	component RPL12 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e008316_P001	Zm00001e008316	component RPL12 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e023297_P001	Zm00001e023297	component RPL12 of LSU proteome component	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	75	144
IPR020784	Ribosomal_L11_N	15	69

External Links

No external refs found!

Spa_g04459

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation