Spa_g04426 (NRPC2)

Aliases : NRPC2

Description : component *(NRPC2) of RNA polymerase III complex & original description: none

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g04426

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00247890	NRPC2,...	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G23780	DRD2, NRPE2,...	nuclear RNA polymerase D2A	0.02	OrthoFinder output from all 47 species
AT5G45140	NRPC2	nuclear RNA polymerase C2	0.03	OrthoFinder output from all 47 species
Adi_g018831	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Adi_g061129	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Aev_g01571	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Aev_g39406	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Ala_g02637	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Ala_g05404	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Ala_g21244	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Als_g02614	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Aob_g33991	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene14109.t1	NRPD2B, Aspi01Gene14109	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0084.g039092	EMB1989, RPB2, NRPB2	not classified & original description: CDS=1-1137	0.03	OrthoFinder output from all 47 species
Azfi_s0114.g046098	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.04	OrthoFinder output from all 47 species
Cba_g01330	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Ceric.05G021300.1	EMB1989, RPB2,...	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g09431	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Dde_g01758	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.04	OrthoFinder output from all 47 species
Ehy_g01687	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g17296	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g24202	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01036596001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01036597001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_05262	NRPC2	subunit 2 of Pol III RNA polymerase	0.03	OrthoFinder output from all 47 species
Gb_30006	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os03g28960.1	NRPC2, LOC_Os03g28960	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Len_g16317	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Lfl_g04274	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.06	OrthoFinder output from all 47 species
Lfl_g12805	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
MA_81144g0010	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerases IV and V subunit 2...	0.03	OrthoFinder output from all 47 species
Mp6g06170.1	NRPC2	subunit 2 of Pol III RNA polymerase	0.02	OrthoFinder output from all 47 species
Msp_g14155	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ore_g25703	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Pir_g55088	EMB1989, RPB2, NRPB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g63659	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Pnu_g00855	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Pp3c16_10710V3.1	Pp3c16_10710	DNA-directed RNA polymerase family protein	0.01	OrthoFinder output from all 47 species
Pp3c21_8540V3.1	NRPC2, Pp3c21_8540	nuclear RNA polymerase C2	0.01	OrthoFinder output from all 47 species
Ppi_g02405	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g07591	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Sam_g16160	No alias	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Sam_g26686	No alias	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Smo148107	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Smo443461	NRPC2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
Solyc03g110880.4.1	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.04	OrthoFinder output from all 47 species
Tin_g03543	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Tin_g05664	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e005007_P001	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
Zm00001e012400_P001	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
CC	GO:0071203	WASH complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007641	RNA_pol_Rpb2_7	1055	1145
IPR007642	RNA_pol_Rpb2_2	185	364
IPR007645	RNA_pol_Rpb2_3	440	504
IPR007120	DNA-dir_RNAP_su2_dom	670	1053
IPR007644	RNA_pol_bsu_protrusion	31	408
IPR007647	RNA_pol_Rpb2_5	623	655
IPR007646	RNA_pol_Rpb2_4	541	601

External Links

No external refs found!

Spa_g04426 (NRPC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation