Zm00001d040696


Description : 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2 Promotes the splicing of chloroplast group II introns. CAF2


Gene families : OG_01_0001018 (Gene family) Phylogenetic Tree(s): OG0001018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d040696
Cluster HCCA cluster: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT1G23400 CAF2, ATCAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.04 Gene family
GSVIVT01015331001 No alias 35.2 not assigned.unknown Promotes the splicing of... 0.02 Gene family
LOC_Os01g21990 Os01g0323300 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2... 0.03 Gene family
MA_757065g0010 No alias 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2... 0.06 Gene family
Solyc05g018233.1.1 Solyc05g018233.1 35.2 not assigned.unknown Promotes the splicing of... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 282 347
IPR001890 RNA-binding_CRM 485 547
No external refs found!