Spa_g03374


Description : cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7) & original description: none


Gene families : OG0006155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006155_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g03374

Target Alias Description ECC score Gene Family Method Actions
AT5G24314 PDE225, PTAC7 plastid transcriptionally active7 0.04 OrthoFinder output from all 47 species
Aev_g24666 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.04 OrthoFinder output from all 47 species
Dde_g22531 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Ehy_g00307 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
LOC_Os01g50930.1 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Pir_g00281 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Solyc03g082970.4.1 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!