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  5. Spa_g03180

Spa_g03180 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g03180
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
AMTR_s00109p00088200 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
AT3G60770 No alias Ribosomal protein S13/S15 0.24 OrthoFinder output from all 47 species
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.23 OrthoFinder output from all 47 species
Adi_g074584 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Adi_g074585 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ala_g06976 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Als_g05939 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g38582 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g01920 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Aop_g41112 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Aspi01Gene08890.t2 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene58740.t1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0075.g037655 No alias not classified & original description: CDS=1-246 0.03 OrthoFinder output from all 47 species
Azfi_s0288.g063234 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Cba_g07246 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.14G028200.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Ceric.14G028300.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.24G030900.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.15 ATRPS13A, RPS13,... 40S ribosomal protein S13 OS=Glycine max 0.06 OrthoFinder output from all 47 species
Cre07.g331900 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.35 OrthoFinder output from all 47 species
Dac_g03966 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Dac_g04888 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g10636 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dde_g19754 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g23160 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018537001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
GSVIVT01027637001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 OrthoFinder output from all 47 species
Gb_16397 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_18181 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.2 OrthoFinder output from all 47 species
Gb_34582 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.19 OrthoFinder output from all 47 species
LOC_Os07g38540.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os08g02400.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.21 OrthoFinder output from all 47 species
LOC_Os08g02410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.32 OrthoFinder output from all 47 species
Len_g05038 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Lfl_g14184 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Lfl_g22208 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
MA_141232g0010 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.12 OrthoFinder output from all 47 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.34 OrthoFinder output from all 47 species
Msp_g28279 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Msp_g34165 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g12307 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g15982 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ore_g04609 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g33497 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pir_g11979 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pp3c16_15220V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.11 OrthoFinder output from all 47 species
Pp3c7_26720V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.13 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016899 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g18450 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Sam_g20369 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g37409 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Smo440805 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
Solyc01g091220.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.24 OrthoFinder output from all 47 species
Solyc03g083530.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.11 OrthoFinder output from all 47 species
Solyc05g051000.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.21 OrthoFinder output from all 47 species
Solyc10g018250.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.21 OrthoFinder output from all 47 species
Solyc11g072260.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.23 OrthoFinder output from all 47 species
Spa_g01293 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Tin_g22858 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Zm00001e021837_P003 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.26 OrthoFinder output from all 47 species
Zm00001e021839_P001 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.31 OrthoFinder output from all 47 species
Zm00001e029210_P002 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 83 146
No external refs found!